I’m still kinda confused cuz I always got the idea that infected being jailed throughout most of the world was the default. Now it’s considered an extremism within an already extreme group.
Did I miss something? Is bome actually relatively more pro infected than most other places despite being hosting the HQ of the inquisition?
Think about the setting: Radiant is a story that meshes present day events vs days long gone. Radiant's story is a twist on the witch hunts that took place in medieval Europe as a shounen. In real life, you don't go from nothing to everything all the sudden. The hunts gradually evolved to the point they got to.
The infected, to this point, have not been arrested/enslaved just for the fact that they are infected. Like when Seth and Doc first run into Dragunov, he askes for their "documents", meaning their work is regulated to some certain extent. And look at the Cyfandir war: Their whole excuse for the war was that Caislean Merlin was harboring a known terrorist.
The reason the infected try to stay away from the inquisition is because a lot of the soldiers are indoctrinated to be extremists. Radiant is highlighting this faulty reasoning while also comparing it to modern day politics, like how everything racist/bigotted that Konrad said was something that a prevalent (at the time) French politician said.
This recent development is not a "contradiction" nor is it a plot-hole. It works perfectly fine with what's been set up before.
I also want to note that this is a natural development for the story and it's not just happening because he wants to say something about current events. There have been countless crusades throughout history. Radiant has the perfect setting to contrast and compare those events to those of today. It probably would have gotten to this point eventually, but sure, current events likely inspired Tony.
(edit): It's also worth noting that countries' cultures can drastically vary. So this could be much more radical than it seems as well